Scaffold Ga0119952_1006019

Overview

Basic Information

• Taxon OID: 3300014050
• Scaffold ID: Ga0119952_1006019
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5524
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007111	Metagenome / Metatranscriptome	357	N
F020667	Metagenome	222	Y
F024098	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10060192	F020667	N/A	MSVTLIAYPLNDSNVEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNERCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSSHVSGTWTASGAASSGYVYGVIDAAGFSDLTRGEFVAPWWRLGPSIYVKKMIDLIFTQAGYRYSSNFFNSATFGKLVLPYAAGTLTSNLSGSNIFAQATGSVSASLTTIANLEFSRDNVNPYYDRPSYWVASSSTFLAPTVPTRWNIQLNYIVSGVTFGLDGVAGGDFDIYNTATSSTIAQIGTVDLTRSSYPFSGSILFENVTIPANAVVKFRYDETEGATFVRFNSGGTVQFTCLENPVSIGVVDMRTALPADVKQGDLLQDLQKMFNLHIMADSQDPKLLYIEPWVDFYASGVVDWSQKADENAEQILTNGDPNASTNLIFKYKDMSDYLSKTYKQSYPLAREGYGGKLFPTQNFYGKGDKVVETSCGTLIPASFASDKILGRTWDLEGTQQSGTIKPLQTGYRLAQYNLIANQTPWLYWYAVDTGVAVSVAQTNLPFISHIDNPYAPTFDLAFEIPRLVYYNAVNASGSTINYTNNNLFNKYWKNYVNETVSKEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLADFVPVTDVPIYSNPEFLYNGPITSDPTDPNYEPPINPELPQPGE*
Ga0119952_10060193	F024098	N/A	MLFKVSGSLIAQPNYRYVCDVKNAAGTTTLARLKCDKLPTTNYGFFDVSKVVETLIAPTKPSLTQTGFADHAGFYSGYRLTFMEEYGSTPVVQTGTVTTVSGRVAFAGNLEQLELADWSGGVYFPGFITDGVSKALTTPTTRTVYGTDYGFLCMGLSGQPWDRVQVTYPTRTFTVALPASVSGSIARFGAGPMNLKALTSGQCSDSQAGSVGFPTADGSSYTIAFEDSFAGNFSVYYTYTIGPCQRFNSQPVHFVNKYGGIDSYTFTLKNRKRANVQRDTFGYNTDVYGTLTYDKVWAGSFDYVYALNSDWLTDAESEWLIELVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQLEVAIAYKNNIL*
Ga0119952_10060194	F007111	AGG	METTVLLNGTEVNKFGSGSMKGIDQTALEGIGSIAGPKGGGKSPTYDVLVKWVARVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDRGVHGRTSSYLSVRDSKFKYKDKIPPPQAIADWIANKGIPVIPTYSRKLKRMRTKQEQGLVDGRSIAFGIRERGLEATNFMSNAVTPEMVDVLVNTVAETLGKSISVATKL*