Scaffold Ga0119952_1005249

Overview

Basic Information

• Taxon OID: 3300014050
• Scaffold ID: Ga0119952_1005249
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6078
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F008814	Metagenome / Metatranscriptome	327	Y
F026561	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_100524912	F001280	AGGAG	MCDVCGCGALGSSTGIVPVTITDVSRDGESGLTLDMTSTPEQTRQFINE*
Ga0119952_100524913	F026561	N/A	MSNFTKDDGTGMTPPPAAGSASGAVTSREATRKYPKQGVKPRMKIDINSHGIRRETSLDPKPKKTRPKKV*
Ga0119952_10052493	F008814	AGTAG	MDNKLTVLEEIIKEIGEELYQKWYNGLAIEDRTEETSKAMSTNAGETAVWVIQTFMNKFNAAAEELKPNDSN*