Scaffold Ga0119952_1002774

Overview

Basic Information

• Taxon OID: 3300014050
• Scaffold ID: Ga0119952_1002774
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9431
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → unclassified Actinomycetales → Actinomycetales bacterium mxb001 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018511	Metagenome / Metatranscriptome	234	N
F072116	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10027741	F072116	N/A	LGKLYTTYVKWDNSLISNLSFRRKGLIGTGKFILQELEYNPKSKRPAKTVLLYDEKPNTTDLSKVVNTITLAGASPQSGTVTGSGSGLVGASSVTVNIQLSYNPFLNSSTNVLVLPVNSGLTQVSIQSANVLVFQNGQKLLPSIQYTISGSTVTIDSNVHYEGSNYEVIINGVTKG*
Ga0119952_10027743	F018511	N/A	MKVDNVWAELASRIPEEYKEQVIASVDRTYRVLSIDPSDMSYLFYIYNNFVNHYEPERLNCPACRTKVVGKMRQIVQYWRE*