Scaffold Ga0119819_1002201

Overview

Basic Information

• Taxon OID: 3300014038
• Scaffold ID: Ga0119819_1002201
• Source Dataset Name: Human oral microbial communities from Los Angeles, CA, USA - S27-04-R
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Los Angeles
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10292
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119819_100220113	F043991	GAG	MSKKTPSVIDYFSLNGDVVEEANEFDGTSLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTPNVIYADILFADGVRTILFKCRQKKNLTRFISRVLELANLGSKHVHPDFRA*
Ga0119819_100220114	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACELLRQIMHDKIDLKDEWIA*
Ga0119819_10022019	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLVKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLISNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGRWYTFRMSDDQKSKFTRHTTTNKKGHQSYDWVLENVEWAADTIRYF*