Scaffold Ga0119819

Basic Information
Taxon OID	3300014038 Open in IMG/M
Scaffold ID	Ga0119819_1000173 Open in IMG/M
Source Dataset Name	Human oral microbial communities from Los Angeles, CA, USA - S27-04-R
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Los Angeles
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014038 Open in IMG/M

Scaffold ID

Ga0119819_1000173 Open in IMG/M

Source Dataset Name

Human oral microbial communities from Los Angeles, CA, USA - S27-04-R

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of California, Los Angeles

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48435
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (37.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

48435

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (37.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: Los Angeles
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Los Angeles

Coordinates

Lat. (^o)

34.0722

Long. (^o)

-118.4441

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F077403	Metagenome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0119819_100017318	F022002	AGG	MMNIYSPTSRSMSRRLALTLGLLLALLLSLPSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGRVRINHAYIAYTDEELERARSAEKESEI*
Ga0119819_100017319	F022002	N/A	MGSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEV*
Ga0119819_100017321	F022002	N/A	MKNIYSPSFRSMSRGLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIRTEGTQAGSDEQAYAVEGLKYARRSTFLVTLHFCKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKFIFDAFTHLEVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI*
Ga0119819_100017348	F077403	GGAG	MDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFVPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIKM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119819_1000173

Overview

Ecosystem & Geography

Associated Families

Sequences