Scaffold Ga0117810_1002310

Overview

Basic Information

• Taxon OID: 3300014028
• Scaffold ID: Ga0117810_1002310
• Source Dataset Name: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chalmers University of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4117
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073573	Metagenome	120	N
F101192	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117810_10023101	F073573	AGGAGG	MPTIVSFYQRFPNEAPPLNLSAFDHTGYTCAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMPFQLCRMELRTGDTTYAILPDNVQQYTMRGDTDGGLLETMAIPLGKVGMKMLLEASDAVEARWVIQGARTAQTLPLTAAQKKALSRFCMGC
Ga0117810_10023103	F101192	GGGGG	MQTEPSDKEGRNMTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKDAPTSFTPCGEDTIRRWVSGRYQIALRFNRYDICLGVEEEIDG*