Scaffold Ga0117810_1000037

Overview

Basic Information

• Taxon OID: 3300014028
• Scaffold ID: Ga0117810_1000037
• Source Dataset Name: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 32
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chalmers University of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57514
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (18.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F080163	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117810_100003718	F032312	N/A	MARIKDYDEDLSAPKLLREMARESKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCFGFTGFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0117810_100003719	F080163	N/A	MKTIKFLQESFETKERFQQEISFRYSYNRDTVESIDFRINRRNIRYFYEAMQNFENSLVNEFREKKSNFCDAKQFLESINNIDKIVFVIITYMKTYFDFYNKDYSKISLHVHLVQFEFTTSVLIQGFYDYSHRDLSFSTNQVLDSEIELLQEKLDLIREEICELIGVDPNLEKQSHEDNYVFNLSIKSHNQIGFFLQATEL*
Ga0117810_100003722	F044555	N/A	MKTTNPSSRITLSQNGNKILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDPEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDLLQNPEDLVSLSQHNK*