Scaffold Ga0117815_1000210

Overview

Basic Information

• Taxon OID: 3300013958
• Scaffold ID: Ga0117815_1000210
• Source Dataset Name: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 641
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chalmers University of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68644
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (24.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117815_100021052	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTSDTSNGTADALVNFAMNFTDGEANIKSINRISSNILQITFTI*
Ga0117815_100021057	F044555	N/A	MKTTNPSSRITINQNGNQILTCKVYKEPIAILHMSNEEILEFISGLDYMGNLPTVPDLVSPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVEELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHYKR*
Ga0117815_100021063	F060985	GGA	MSNIDEKAKNNFIIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCKIFDNQNHEFWHSVIKPWFQPERFGITHLWLWFSSGFSHIGYGEYHIIRGDRWLKTPIDKIDREDRRFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0117815_100021064	F032312	N/A	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNHKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYSFKKYAIPYIFILVAWFIIFLYGLVS*