NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117815_1000210

Scaffold Ga0117815_1000210


Overview

Basic Information
Taxon OID3300013958 Open in IMG/M
Scaffold IDGa0117815_1000210 Open in IMG/M
Source Dataset NameHuman gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 641
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChalmers University of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68644
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (24.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F060985Metagenome / Metatranscriptome132N
F105375Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0117815_100021052F105375N/AMKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTSDTSNGTADALVNFAMNFTDGEANIKSINRISSNILQITFTI*
Ga0117815_100021057F044555N/AMKTTNPSSRITINQNGNQILTCKVYKEPIAILHMSNEEILEFISGLDYMGNLPTVPDLVSPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVEELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHYKR*
Ga0117815_100021063F060985GGAMSNIDEKAKNNFIIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCKIFDNQNHEFWHSVIKPWFQPERFGITHLWLWFSSGFSHIGYGEYHIIRGDRWLKTPIDKIDREDRRFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0117815_100021064F032312N/AMPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNHKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYSFKKYAIPYIFILVAWFIIFLYGLVS*

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