Scaffold Ga0117815_1000077

Overview

Basic Information

• Taxon OID: 3300013958
• Scaffold ID: Ga0117815_1000077
• Source Dataset Name: Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 641
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chalmers University of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108999
• Total Scaffold Genes: 164
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (37.80%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location

• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F057001	Metagenome	137	Y
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117815_1000077104	F083452	N/A	MSGRIKIKPKNKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK*
Ga0117815_1000077107	F102167	N/A	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMDEYVAVLMIKSYDKINGHILTTFSFHDKDMGGLRRLVSNAITAVGLRNNPLTGDGNTAIK*
Ga0117815_1000077135	F089592	N/A	MKDILKSKEVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANIVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKTKKVKDVKKKEDVDEGDKVNTEE*
Ga0117815_1000077136	F089591	AGG	MTMTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWKSLNKINHIDDPESTSFGLPDDYLWFSNIKGSFSYNGCEVGDFVMWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK*
Ga0117815_1000077143	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSGKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYVNIQVCKMTSFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGVRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPSDMWNYFDINTIPFFEVDKINPNINNFDFLNDWVSGERRTGWNDDNMSGRGLDHLTGFFVYHSNSIRVDKLPDYIYEMRSITWFVMDYSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYGSQYPDENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWVIKPE*
Ga0117815_1000077146	F089590	AGTAGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKKINVFKMFSFSKNISDETFDDIRRIADDEVKDKS*
Ga0117815_1000077147	F075481	AGGAGG	MRLRISLRAVFCLGLSLFLSSCGSRRQVSDTSIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK*
Ga0117815_1000077151	F106193	N/A	MGCNTCKEKALKAERERIERSMMNRPSSTVVSDREYVSRSTAGCMVMLDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAEHIKP*
Ga0117815_100007729	F076653	AGG	MTIRDKYFGWKDIFFSRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKKRLAKRFNKSLGGDGELFGANLACMVCDRKDIDWESLRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
Ga0117815_100007739	F083451	N/A	MVKSEKEKQILDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGNNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE*
Ga0117815_100007757	F078005	N/A	MKKSEFVKELEKIIDMVKIEDDGFEYGGKVIFYKKDDDNYEITVKNIEMDLMVEASAMASMDDRTFDCLMSEVYKQKFTKTITMPEDEDDEDN*
Ga0117815_100007786	F078006	N/A	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVLNELLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI*
Ga0117815_100007791	F080673	N/A	MDEIMKLQDEALLYLRDNITREEAYYILTTENEMTEVLIAKKEDGGKRVKILDMEYTIEKDDMLLLFDTDGIIDECLLTYSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRNDRDKIDFMFIYYMARLCE*
Ga0117815_100007797	F057001	AGG	MTSKEINKVQNEVKKASEKTLTGAVKAWCNLFKSGKEINDILKENDIKADKSIVPALVNLAKDKEIVIQLCKEILPRVNNTFCSYKEVEREYYDKNDQDKNKKLKMNEIEDVAILGSCHKRFGYNEPIEFDFGIYYETFHGADKRIVKCAVPIKRYTFSLIAKCITYYLTHPRNDR*