Scaffold Ga0117818

Basic Information
Taxon OID	3300013946 Open in IMG/M
Scaffold ID	Ga0117818_1000035 Open in IMG/M
Source Dataset Name	Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 314
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chalmers University of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 314

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chalmers University of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67819
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (21.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

67819

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (21.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117818_100003524	F094005	N/A	MKKEVIKLKEGNSVIYQDKNLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDEILEKVITLDKKLKKLIEKLNE*
Ga0117818_100003525	F032312	N/A	MSRIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGVEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0117818_100003527	F080163	N/A	MKTIKFLQERFQQEISIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKTHFCSANQFLENINDFDKILFVIINYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNHRDLSFSTKLENKVLNSEIELLQEKLDLIREEICELIGVDPNLEKQNHEDNYMFNLNIESDNQIGFFLQATKL*
Ga0117818_100003530	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0117818_100003532	F101357	N/A	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLRDDFHNYSNTSNIHYEGGKFPSMLTIQLFNLEF*
Ga0117818_100003535	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELYSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0117818_1000035

Overview

Ecosystem & Geography

Associated Families

Sequences