Scaffold Ga0117792_1000596

Overview

Basic Information

• Taxon OID: 3300013941
• Scaffold ID: Ga0117792_1000596
• Source Dataset Name: Epidermal mucus viral and microbial communities from European eel in Spain - water from Alfacada pond (Ebro delta)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Valencia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4725
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus → Epidermal Mucus Viral And Microbial Communities From European Eel In Spain

Source Dataset Sampling Location

• Location Name: Spain: Alfacada pond
• Coordinates
  • Lat. (^o): 40.647955
  • Long. (^o): -0.738702

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012345	Metagenome	281	Y
F088520	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117792_10005964	F012345	N/A	MKFKLTYHFGNKVVQEWSFHSKALAYWYKSELIWTGRYNDGKFKVSPI*
Ga0117792_10005965	F088520	N/A	MKNTENKFWFAEQSSNASANSIIVDVFNRYDDEHIGTIELIYNYDKNNNNETWTIESAEWHQDLTLEQCDEAMQELTDNATENFHEFCYECYNYDPRDDEDWWFV*