NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0117792_1000083

Scaffold Ga0117792_1000083


Overview

Basic Information
Taxon OID3300013941 Open in IMG/M
Scaffold IDGa0117792_1000083 Open in IMG/M
Source Dataset NameEpidermal mucus viral and microbial communities from European eel in Spain - water from Alfacada pond (Ebro delta)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Valencia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9091
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (58.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus → Epidermal Mucus Viral And Microbial Communities From European Eel In Spain

Source Dataset Sampling Location
Location NameSpain: Alfacada pond
CoordinatesLat. (o)40.647955Long. (o)-0.738702Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034753Metagenome174Y
F037191Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0117792_100008329F034753GAGMKSLVTNLAEKYKQQTSYWSGSLFEEVVNFSTDYKGKYGEELFRDILLNCTDIPVQWDEDSNTSNDDGVYDLFWYLHDGKKIRVEVKTSGRTVSKGVAKGWQHENVYFGDNKWDKLVFLDYDSNDVLYITIVNYDDVVTGDAIDLSIFGKKAHCRKNEEGKAKVDFSTKSIANGIAKGATFKYDFNNPDDDLLGFFLLSKLA*
Ga0117792_10000835F037191AGGAGGMTVTEWIEKLKEFPQDQEVRITDGHNYHFYEGDFEFQLFEDVDGSTFVDIGIGGFEEKE*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.