Scaffold Ga0181464_1001931

Overview

Basic Information

• Taxon OID: 3300013873
• Scaffold ID: Ga0181464_1001931
• Source Dataset Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In2-11 gowning area SPAdes reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10398
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Jet Propulsion Laboratory, Pasadena, California
• Coordinates
  • Lat. (^o): 34.1
  • Long. (^o): -118.1
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017428	Metagenome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181464_100193114	F017428	GAG	MGRLQGVTVDIEGTSALANFEVIEILDDNNPYPTLLGINWATDMNGVINLKKRKMIFEKKVLCVIVTLDPIEELHYIDPVCDYESDDDLDCIYKITT*