Scaffold Ga0181473_100868

Overview

Basic Information

• Taxon OID: 3300013866
• Scaffold ID: Ga0181473_100868
• Source Dataset Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - In2P-11 SPAdes reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8318
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Jet Propulsion Laboratory, Pasadena, California
• Coordinates
  • Lat. (^o): 34.1
  • Long. (^o): -118.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017428	Metagenome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181473_1008683	F017428	N/A	VIEIVDDSNPYPALLGIDWATDMNGMINLKKCKMIFEKKSLRVVVPLDPVKGSHYKEPLHDYDSNDDLDYIYKIIVWEQDWVNPIVDGRISWERESSCTSDSNEEIE*