Scaffold Ga0120158_10001806

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120158_10001806

Scaffold Ga0120158_10001806

Overview

Basic Information
Taxon OID	3300013772 Open in IMG/M
Scaffold ID	Ga0120158_10001806 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26359
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091731	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120158_1000180624	F091731	GAG	MALTFIPSDLVEQAAREENWTDSDRQHCSRMLRQAFEESFQVKEIQRSVNGLIAYDSPHVSFESVRFQEGAEKPVLQALEDLSKKLLLAKPD*

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