Scaffold Ga0120179_1000421

Overview

Basic Information

• Taxon OID: 3300013763
• Scaffold ID: Ga0120179_1000421
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15146
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000443	Metagenome / Metatranscriptome	1132	Y
F005160	Metagenome / Metatranscriptome	410	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120179_100042111	F000443	N/A	MQTAGALNVAIAWSKVDVLTPSQRITAELQIRGRLRDTINDPEPVFHLRNVSAEPLIPGAVALNGVPEGLFSKNLIGGIRTIEPEPPPPDQIMETIRRYIMFQADTFMVTGAVEFPKATETAMHNEILMKSRFFPVVDATVTIFGANSKSWTQPLIMVNRDLMLAVYLG*
Ga0120179_100042115	F005160	GAG	LPPASALLRLLAFAVPSALAAAGVQPLLGAATGVVQLRWAIGLTAPALVVAGLVFGAGRLFDRGDALQPPWYSAWVLFPGAFLLAGAAAMCIFGALIELSLIPLAMWTFLIAGSILWAGAIVLVRSASR*