Scaffold Ga0120183_1001424

Overview

Basic Information

• Taxon OID: 3300013754
• Scaffold ID: Ga0120183_1001424
• Source Dataset Name: Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C1.rep2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1025
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location

• Location Name: USA: Kessler Farm Field Laboratory (KFFL), Okalahoma
• Coordinates
  • Lat. (^o): 34.975667
  • Long. (^o): -97.519
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008410	Metagenome / Metatranscriptome	333	Y
F028691	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120183_10014241	F008410	N/A	TLRLKLMFHVVSSHFVAAPDPL*KSVSGAFNARVYASETISCFVATNMPNPLFQSKTHVLGGSMPFRSRT*PVAKTGIEAHLMHEFMPLEPFLVFLQQTCPIHYFRSKTQVLDGFTPFCCRTRPAAKISIGVHLKHEFVPRKPFLVWSQRTCSIHNFRSKTHVYNSG*YLNALLHSF**QLM*
Ga0120183_10014242	F028691	N/A	SGAATKWRETTRNTSFRRKVCGAKPDGRFRAPKWCENTQNVSFGPKGVH*