Scaffold Ga0117817

Basic Information
Taxon OID	3300013752 Open in IMG/M
Scaffold ID	Ga0117817_1000134 Open in IMG/M
Source Dataset Name	Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 288
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chalmers University of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Human gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 288

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chalmers University of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31726
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (30.30%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

31726

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (30.30%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F090484	Metagenome	108	N
F099406	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0117817_10001341	F090484	N/A	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRVTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENVQFITYVDNPHAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIKKEEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEQARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKIATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINT
Ga0117817_100013419	F099406	N/A	MAEVGYNSKFEGLEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEDGGTKVLESLGMVSTGVDSNYLDLSMFSGDSGTLDEASFGKVLDAYNNKITLGKLGRNYYSLDYFLDGRDFGGVFELKIVLVSFSDTNTGEGVSESDIEIQVGTYTVTQDKTYKVMNNMVTLSNIILSYLKFMATTPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVTIPANSFIELSIWYINDKLVIRVGEQA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0117817_1000134

Overview

Ecosystem & Geography

Associated Families

Sequences