NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119802_1000010

Scaffold Ga0119802_1000010


Overview

Basic Information
Taxon OID3300013751 Open in IMG/M
Scaffold IDGa0119802_1000010 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Los Angeles, CA, USA - S14-02-D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Los Angeles
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)195379
Total Scaffold Genes193 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)132 (68.39%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter showae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: Los Angeles
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085821Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0119802_100001088F085821AGGAGMNDVFERLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNIPAVQLCIDYLVAQGYPTAENEKKFLNWIFMEPVYYLKYFISDASTQKKLHHNLLNLWYESTKRQILEHDKGKHDEAYIDAWVKANVNKTLSIIRSGETIASCKEDVAKHSRTINDEYEQNIGLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKKVNKIK*

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