Scaffold Ga0116838_1005872

Overview

Basic Information

• Taxon OID: 3300013750
• Scaffold ID: Ga0116838_1005872
• Source Dataset Name: Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S2-Shot-B61-calc
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Oklahoma
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1338
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Fossilized Dental Plaque → Oral Microbial Communities From Fossilized Dental Plaque From Dalheim, Germany

Source Dataset Sampling Location

• Location Name: Germany: Dalheim
• Coordinates
  • Lat. (^o): 51.565093
  • Long. (^o): 8.849015

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116838_10058722	F033081	AGGAGG	MPQNTRPTFVWPKLAVEIGNAGYFGRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGTAWTVGVAGVFLIGDFTNYTKQQKFLHSLKATGCGVYDTLLLFALMEEQAFRSGSEKWSWRERARASVCFGLLHITNIWYSLAAGIALSMTGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAAAAVLYATISIIKVL*