Scaffold Ga0116824_101115

Overview

Basic Information

• Taxon OID: 3300013722
• Scaffold ID: Ga0116824_101115
• Source Dataset Name: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 843
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location

• Location Name: USA: Gulf of Mexico
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004368	Metagenome / Metatranscriptome	441	Y
F029777	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116824_1011151	F004368	AGGA	MGTRLAEIISDRHEDLLYEDSRAMKLTSYVMAERCLQVEAYEIYNGYKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEEQWYELESSCELHWQPYEEDPIWQITERLKENFDRTGRTNG*
Ga0116824_1011152	F029777	N/A	RATNYVTWDHGKEMWCEVDHLMMNFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDEKDRGDFFDLSGNNLESPMADLERIVNGN*