NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118076_105611

Scaffold Ga0118076_105611


Overview

Basic Information
Taxon OID3300013715 Open in IMG/M
Scaffold IDGa0118076_105611 Open in IMG/M
Source Dataset NameHuman skin bacterial and viral communities - University of Pennsylvania - MG100349
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Pennsylvania
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)569
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Skin → Unclassified → Unclassified → Human Skin → Human Skin Bacterial And Viral Communities - University Of Pennsylvania

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035626Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0118076_1056111F035626AGGMAPSIIANNAIQGEVFLPGQIFVFGGLVLRANSLGHLEQIESYAPGHQVGFGNLNYTANIRGDLIFDGFEPVSGAPHNHNEHDLALWPDSVREITPVATPALD

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