Scaffold Ga0119859_10107

Overview

Basic Information

• Taxon OID: 3300013556
• Scaffold ID: Ga0119859_10107
• Source Dataset Name: Assembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA - NIBSC_BSRI
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Blood Systems Research Institute (BSRI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1273
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Synthesis → Unclassified → Unclassified → Unclassified → Assembled Human → Assembled Human Viral Communities From Clinical And Cell-Culture Passaged Samples From San Francisco, Usa

Source Dataset Sampling Location

• Location Name: USA: San Francisco
• Coordinates
  • Lat. (^o): 37.77
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119859_101072	F106193	GGA	LNFKDIIMGCNTCKEKALKAERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQVMERDVVSIYRQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAEHIKP*