Scaffold Ga0119859_10015

Overview

Basic Information

• Taxon OID: 3300013556
• Scaffold ID: Ga0119859_10015
• Source Dataset Name: Assembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA - NIBSC_BSRI
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Blood Systems Research Institute (BSRI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4857
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Synthesis → Unclassified → Unclassified → Unclassified → Assembled Human → Assembled Human Viral Communities From Clinical And Cell-Culture Passaged Samples From San Francisco, Usa

Source Dataset Sampling Location

• Location Name: USA: San Francisco
• Coordinates
  • Lat. (^o): 37.77
  • Long. (^o): -122.44

Associated Families

Family	Category	Number of Sequences	3D Structure?
F083452	Metagenome	113	N
F102167	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119859_100152	F102167	N/A	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIESYDKTNGHILTTFSFHDKDMGGLRRLVSNAIMAVGLRNNPMTGDGNTAIK*
Ga0119859_100155	F083452	N/A	MSGRIKIKPKNKDKRPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYIKRNI*