Scaffold Ga0119859_10009

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0119859_10009

Scaffold Ga0119859_10009

Overview

Basic Information
Taxon OID	3300013556 Open in IMG/M
Scaffold ID	Ga0119859_10009 Open in IMG/M
Source Dataset Name	Assembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA - NIBSC_BSRI
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Blood Systems Research Institute (BSRI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7954
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Synthesis → Unclassified → Unclassified → Unclassified → Assembled Human → Assembled Human Viral Communities From Clinical And Cell-Culture Passaged Samples From San Francisco, Usa

Source Dataset Sampling Location
Location Name	USA: San Francisco
Coordinates	Lat. (^o)	37.77	Long. (^o)	-122.44	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098313	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119859_1000911	F098313	N/A	MREMEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRYDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGHCVGEFINNKDMD*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.