Scaffold Ga0119859

Basic Information
Taxon OID	3300013556 Open in IMG/M
Scaffold ID	Ga0119859_10005 Open in IMG/M
Source Dataset Name	Assembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA - NIBSC_BSRI
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Blood Systems Research Institute (BSRI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013556 Open in IMG/M

Scaffold ID

Ga0119859_10005 Open in IMG/M

Source Dataset Name

Assembled human viral communities from clinical and cell-culture passaged samples from San Francisco, USA - NIBSC_BSRI

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Blood Systems Research Institute (BSRI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11448
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11448

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: IMG/M)

Source Dataset Ecosystem
Engineered → Lab Synthesis → Unclassified → Unclassified → Unclassified → Assembled Human → Assembled Human Viral Communities From Clinical And Cell-Culture Passaged Samples From San Francisco, Usa

Source Dataset Ecosystem

Engineered → Lab Synthesis → Unclassified → Unclassified → Unclassified → Assembled Human → Assembled Human Viral Communities From Clinical And Cell-Culture Passaged Samples From San Francisco, Usa

Source Dataset Sampling Location
Location Name	USA: San Francisco
Coordinates	Lat. (^o)	37.77	Long. (^o)	-122.44	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: San Francisco

Coordinates

Lat. (^o)

37.77

Long. (^o)

-122.44

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F075481	Metagenome	119	N
F089590	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0119859_100055	F042095	GGAGG	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGGDGYCIIFRSLAIKHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLIVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTDVYYLNMFNMLDLRDIESSGIRNIKNMKKLNTLNLSSCYLDRYIKEFNDLPELRELKISPGPTDMWNYFDLNTVPSFEVDKINPTITTFSFLEDWMASERRTGWNDDNMSGRGLEYITGFSAFSSNSLNMDKLPDYIYEMRSITWFDVNASTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVLMYSSLYPDENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA*
Ga0119859_100057	F089590	AGTAGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLDTIGDAFADAYLVKVFKAVFNRINVFKIFGFSKNIPDETFDDIKKIADDEVKDKS*
Ga0119859_100058	F075481	N/A	MRLRISLRAVFCLGLSLFLSSCGSRRQVSDTSIDSRLISRIETMIDEVMDRRIVEIKTSDLNADIVITERKFDTGKDVDPATGERPVSSVTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRLGLIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119859_10005

Overview

Ecosystem & Geography

Associated Families

Sequences