Scaffold Ga0120195_1000014

Overview

Basic Information

• Taxon OID: 3300013500
• Scaffold ID: Ga0120195_1000014
• Source Dataset Name: Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T4.rep2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3510
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location

• Location Name: USA: Kessler Farm Field Laboratory (KFFL), Okalahoma
• Coordinates
  • Lat. (^o): 34.975667
  • Long. (^o): -97.519

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003450	Metagenome	486	Y
F022011	Metagenome	216	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120195_10000141	F003450	AGG	MEPPNQISPPVKQPRIIPWEEQLQDHNEKIEEYLRNLVFRGCTYETTVKTARVVLKRLFDGLQLEDPNHPRGRRQILVWELLEPERGSSRLGLLISLLLQDDLAHGTRRKYIRELRSFCDYVLAKPNIPGSAVLTISEKYGPITQTFTKYDVPMHVQDRPTQPRYALSATLRDEFYEFMRTEYLPKQSSPHRGARDYTAIVVQAEIGARTSELLGIRSSGESCDIDWQTERVRLFGKGKAFS
Ga0120195_10000142	F022011	AGGAG	VSTEVKDDLLGSLDERIRRISREVLLEHHAREQQSGNSSIADSEDEKLAVTLRRIMAKEFVSIKETALLLNCSDGHIRNLVGKAQKGKASHPIPFLDLDGVTVFPRVKLLEWAKQPKKKLRAVS*