Scaffold Ga0177922_11178113

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_11178113
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3759
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040107	Metagenome	162	N
F060919	Metagenome / Metatranscriptome	132	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_111781137	F040107	GGAG	MTGIEALSILKDGKLLRRTSWESHEKCQAIDFFGQWVVHLVREKEDEISDEQLKEIFNERFSLVQSSFDDFFGSFDTIDAGEFLHDDWEIVE*
Ga0177922_111781138	F090404	GGA	MKFAEVIDFLMSGKRVRKTNWESKTAFFLYDKEDNTFDFYEVLDGEECRIQFYTELNLTPKDLMSDFWEIVE*
Ga0177922_111781139	F060919	N/A	MTGREALDKLQAGYILRREAWEPDEKCKAYFSDDLWSIRVECDSISPAPEYVPDDSKFAGYMSIFDAIDAGEFLMDDWEIVDEIC*