Scaffold Ga0177922_11167602

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_11167602
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1261
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023585	Metagenome	209	Y
F033350	Metagenome	177	N
F064496	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_111676022	F023585	AGGAG	MSVKRLSLVDEFHGLVSRRLKDLFKRLNHAEVENFKDIISHLDYSHRITKELLERAKKYQKRDVEKKK*
Ga0177922_111676024	F033350	AGGAGG	MSAVDVEVPEAKWSMLVWKTLKEKPHNDERVLMDIGGEVVVGRFVDDSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0177922_111676026	F064496	N/A	AISRACRSAFAHIVVLIDKSLSTTPAEEVPYGGFQDINTEKFEEAPKAEPTKISKADLADITAKLNGVRIGEPRDMELKFGKHKGSTLRQIAMLGDKGLDYLEWLSRQDLKPGADGKPYKNDIIRNEIIAEILLEAESLRKGTPDEIPF*