Scaffold Ga0177922_10931466

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10931466
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5567
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009529	Metagenome / Metatranscriptome	316	Y
F020352	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_109314661	F009529	GAGG	MQCLICKKQVTTECRACYSRMRSVLKELPQLQFEAGFFLEPSRSGSGAASAERTIGINVNALDFSMATDLLAILHGWETIIRRDRQLTPPALVAREPTTDMEVDATCEFHITHLTWTMTQPWALDFAGELWGLHARGRAAAKKFKEQARRIPCPTDDCNRFVVIDVEQLTQDVSCFGCKQSWSVLRLVALAMSNPNRRFFLDVEAIAAWLQMTEREVYRLVKKFEIEKRGYTYDLQALMKARQQNA*
Ga0177922_109314662	F020352	GGA	MNQDFKPINCRKCGTVIWTGISWAGFQKRLDTATLTIEEEILKRISKVMTFECFKTKVSFEAVERSLNRIRWGKNKASVILAEHTCSSLRMIQTEAPEYWANRGQKEEAPY*