Scaffold Ga0177922_10878996

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10878996
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9600
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F005775	Metagenome	390	N
F011474	Metagenome / Metatranscriptome	290	N
F016114	Metagenome / Metatranscriptome	249	Y
F030991	Metagenome / Metatranscriptome	183	N
F042709	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_1087899610	F003659	N/A	MPLNVNQVLDRYLIALEDVPVYNYPNGTRIGTINKGNATARVYSYVTRPGGQLWFEFDYTIPGNAPGSYWVLDKEGRFRISQAPGNAAIDPSSLPSVDVFPSGGGKIKTFALYGIIGVLALLLLKK*
Ga0177922_1087899612	F030991	N/A	MVLKYLGCDKKYFRYELYDGDRMELYVETKLSARATAKLLFRNFGIEHIVLKIYNRTYGVKT*
Ga0177922_1087899614	F011474	GGA	MKEKIDHLNHFDIVVKEELASCTSADEMLHVLAKNYDLRKPLGGITKAAFTIGLRTAVGMLKPEVKANFNYKAKELKDTRFPHLKIFR*
Ga0177922_1087899619	F002259	N/A	MGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSQTTAALTHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPEAANGISYAAATNTTIKFDLVIGNKTVIKDATVEFGGEQAFYNDGTVGSCVIDLEGVGILIPPQVEYYVVAKACNNSTRVATSIRLGCYLFGTGALLNFNTTI*
Ga0177922_108789962	F005775	N/A	MKKQRPIYTKAQHQIVTPAFGEKKIQMHKNVKWTTKDDRELFIMASASVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLGDVFEQITLFLKNNAGKLDQVVTTELDTYTTHHLKNLLNTNEQP*
Ga0177922_1087899621	F042709	GAGG	MNPLVLAGAVALFFLLRKRPPVVDNTTPDVVPFTAANVNAYKNLNTTSTFDNRLAKEARRVTPDGTGKNIVDGSYKCFAPGNQTRRNAIIKVYEDLERLQTRINNSTGERKEEARRDKIEKDNERAILVAEHYMICEAFFEELKKKSQTPTQTTITTAQQERGTL*
Ga0177922_108789963	F016114	N/A	MNKYWAAAFFDSRDVETINEMAAMARRMLICQGELQRDELLRLKMKYPHLTTYDK*