Scaffold Ga0177922

Basic Information
Taxon OID	3300013372 Open in IMG/M
Scaffold ID	Ga0177922_10823440 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013372 Open in IMG/M

Scaffold ID

Ga0177922_10823440 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8014
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8014

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.844722	Long. (^o)	-79.573889	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Ontario, Canada

Coordinates

Lat. (^o)

42.844722

Long. (^o)

-79.573889

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F017613	Metagenome / Metatranscriptome	239	Y
F083898	Metagenome	112	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_1082344011	F083898	N/A	MTIQPGNGYNFVSSSQGTSLDIDKPWTPPIGDAMVFALDLPLSTQLPEQLVYGTGAGGDPSPFECQIVSINGQRYLQIGVGAIGYTAGPMPIIKAGAETRIMQAYANKVQICPSGTRNYGDLYPVYPGDDPAYSLTWWMEDGGGYELSDTNDPLTLYAFKWDVDVGVAPFSASTVVNTGLPTLALIASSNSADQNKIAVDPGPSIFVQTMNVQKMTGYDHASTGLTGDWGHCHTSWLNPVKLGYSYKAIATITASANTFSMSGVEERPGIPLVQNQVQSVYLFGKASGGVVYISIGGQVSVIPFPVTTFWDPIAPIYSNELTLANCLNSIPGITFMIDGVPVVIGFTGNVEVSRTTEGSYYVTFCNQLSGLNVPLMTFDTSGVTAYAFDFDITQYHTGNIDLTTPMQTGMVQLRNVPNQDEATDPYNVNFAANWDQIVNKAACVACDAFSGDVTTAGMFNITGATTIPVDYSIVGGCINEPTGHPFLVTHVS
Ga0177922_108234402	F017613	N/A	MANSITAAPSVLSAGVLSSLVNKLPVLSGISSVFSARPGSTGMSIQVPLIGTSSATAFGSGGYLTQDDATITAATVSLTQYKISSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDVINTQVTAANYSVSSTTGADLAYSELVGVQKTLDDAKAPSPRYAVLNSTYISDLRKDTTIVGNNVLGANIIRDGDLGIIAGARIYQFANLSANSENLAGWVAGPDAIAFASALPDSEGIPGFEVSNATDAGTGLGVQVLVGMEQSGFLNVTATLMFGAAVGRATSLVRLKTA*
Ga0177922_108234406	F001055	N/A	MGTKSIRHIVEATVATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCEAARAPSDLPEGLGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDATCYDVTMQSEDEGIDERSWATSFTFDILTVFPA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0177922_10823440

Overview

Ecosystem & Geography

Associated Families

Sequences