Scaffold Ga0177922_10776553

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10776553
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3636
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F029443	Metagenome / Metatranscriptome	188	Y
F048316	Metagenome / Metatranscriptome	148	Y
F049637	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_107765532	F029443	N/A	MTLANLVAKLKAIQEEHPMIRTFGEGDIYDYTDNGGEIVYPVFWTVVRPSQYANTTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNDYNFNTQPQATVEFFQERFDDFTAGVSIDIEITSPMPLNLCQVPTTT*
Ga0177922_107765533	F049637	N/A	MNMLKSDEIGVPSTFLAIFANITTMAGLEFVNVVFTWVISILSIIYLTYKIKNERNKNKVNKNGKG*
Ga0177922_107765535	F048316	GAGG	MKNIIDWIKGFVSENGEASSKRLVGVISAIALCYTLLKTQSEALVYSVAALSAAALGITAAEKIFKKPTDKNENQSPS*
Ga0177922_107765539	F001775	N/A	MMNFSTDNQKIKIATLAFIAGIIVAFIFYPKPEFETVYKFETVTKTDTLIVEVKDTVYIPKTKIKTEVLRDTVLIDFKPKISRFETSFPFEYGSTSVSGEVLGEVLKMTAVNDYNLPVVTNTVTTTETKTIVQKAKGIYLGAGVNSLLQPSAKVSVLDN