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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013372 Open in IMG/M |
| Scaffold ID | Ga0177922_10539935 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2239 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 42.844722 | Long. (o) | -79.573889 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014513 | Metagenome | 262 | Y |
| F048800 | Metagenome / Metatranscriptome | 147 | Y |
| F054624 | Metagenome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0177922_105399351 | F054624 | N/A | QLTFRWNGLWTGFRPTQLLSAYILNEKRGFGFSFDTDNKNRLYEITTSHTDDYGVNGTVAIESFFTSGRYDFAQSGASNKFLRKRITGGEMWLSEIKGEVTSRAEFRPDSYPCWSELKVPTTYGCNPCSPVVTNECYPRRSGDTYKRYKFNSPDPSECNSISDIPTIEGSEFQLKISLTGAATVDRVRIMANIKNLEDSPIGDCPENDQECPDINCCPERYYDYSINEG* |
| Ga0177922_105399352 | F048800 | AGGA | LDNQDSSPAIIFPNVPIDFCPSGNWSEILQQFIDTVLSNGTINIPGLGDVTPEEIAAINLELANQQNEIDALDTRVTELEDNSIRFGTITGVATGDSVRTVTFTALPTVNYGVSITPIASATIGVQATPLFALNGGSKTTTGFSIRIENNIAEITSVDWMAVHTS* |
| Ga0177922_105399354 | F014513 | N/A | MGDTLKEMAELVKGFVGDSGVCSDERAFKAINQARRLLWNKRAWTTQEEYVQICCIDGCFTLPNRYEQIKLAWMGNESMSLADEWFNATNAFALQPNQSCHRGIVEAGGLHVLFNDYEINTYQIGIMVESDDDAGVELAFEAQDEYGTYHLAKITALNRGELAKTSQQFRAVRSVSKPVTNGRIRVYAYDTILNTKTLISLYHPSDVNPSFRRFRTPKRCDSVTLYASKRYADLTDPKELVEFIPDAMIYAILALNSRDNRKAQEFLMNLDLAIKEQEKEME |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |