Scaffold Ga0177922_10493683

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0177922_10493683

Scaffold Ga0177922_10493683

Overview

Basic Information
Taxon OID	3300013372 Open in IMG/M
Scaffold ID	Ga0177922_10493683 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2595
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.844722	Long. (^o)	-79.573889	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035193	Metagenome	172	N
F042160	Metagenome	158	Y
F064395	Metagenome	128	Y
F070853	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_104936832	F064395	GGAG	MSEEDRSNLRDLHAGFALVGLIMKGGVTAQLTQVAYEIADSMQEARDQHSVGIVSIKRQTKKEKANDSQ*
Ga0177922_104936834	F035193	N/A	MDGDTMPHLIGELSPVVHPKNWELIRLPVRKINENYIVYVADGYHRIYTDDTLPDVLKSKFAMILANGSSEYLRDSKMLRLTLYTNTFSPELDEVGWRASDTYFCLVVDRLTLESLKGGKLNDA*
Ga0177922_104936835	F042160	AGGAG	MISRYFLEGFGSEEQLNELLASDTLPLVRELQFKYGLKVMDKVVNVNYPLTDKDSYMMCYPNGIAVGKVWTTKVGGAENNQLEFCFRTPFYQKSRGQDSNDRETIRSTKLSSLMAVLKRQDVVKPVKHLMDAKVKVVKQGVSVLRSAMGDSNKKNDFTPDEVHAMLVSILGESPDGIIAPLDLNKCKNTLDIYKEADRIREVKREESKRFFKNPFYLIGIDEYKHLLIGKFKMTVMHSDTSKMEYEVVEDFKRVRTIEEYPELLPLMTMMKVSYEAKECRRLGVLNFPLQDKYDEGLDAAFFYNGFPNDYEQAWMATPCPT*
Ga0177922_104936837	F070853	N/A	VDCETMQPTKPITVIGRKVDRKVGKDLLAKYADFYATTEVMTKAMDYEVFVRTMNDVMNDHLDGDIARDHTEYSAKAETLLHTAPLDAAMLYIMGWDIGGMRWNLRRFIDSQISRYSSNEDTPHTMFLNLKRRLNKEIYKQNDEVFKKVEYTNCEMFPPSEWGYTVMVDGEEVKQYD*

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