Scaffold Ga0177922_10433423

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10433423
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3989
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008615	Metagenome / Metatranscriptome	330	N
F011474	Metagenome / Metatranscriptome	290	N
F016114	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_104334231	F011474	N/A	ARLPRVHNNPKTKLLNNQQTDFTMKEKIDHLTHFDIVVKEELASCTSAEDMLIVLARNYDLRQPLGGLTKAAFTIGLRTAVGMLRPEVNATANYKEKELKDTRFPHLKIFR*
Ga0177922_1043342310	F008615	N/A	MNTINTFGAKMFGRFIRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVLRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDVERFAAFAAWIGDLLRNPEKFT*
Ga0177922_1043342311	F016114	GGA	MGNRYWDAAFFDSRDVETINEMAAMARRMLICQGELQRDELLRLKMKYPHLTTKD*