Scaffold Ga0177922_10251754

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10251754
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1648
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F058947	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_102517542	F058947	GGAG	MISCELQDLEQIMGKAGVLLTGNAYDKAQDYLQDHCVCATYNYLLGYKRGRE*
Ga0177922_102517543	F000821	AGGAGG	MNREYLKAKVDLCLNQAEIDIQQQEIANAIKNLERANLALSRIFNLEEEESE*
Ga0177922_102517544	F001477	AGGAGG	VSNVYTIHPKKSELILFYEVVEGDGDNTWGGADAGQAIQWLAHAPAGSRILVSAWDSDEEDAHLVGQTLDITDIVREASL*