Scaffold Ga0177922_10212280

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10212280
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2964
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F006935	Metagenome	361	Y
F022886	Metagenome / Metatranscriptome	212	N
F030763	Metagenome / Metatranscriptome	184	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_1021228011	F006935	N/A	MDKRYAKQIIQWAEEAKEILTVRKEIIMDDDVTDEQLGTIIRMMYRAKVETQNETILKTKQNLEK*
Ga0177922_102122803	F030763	GAG	MLVIKNYKKIKNKYFGDWQVGKVEELPECYAMQVWSTTEKKSVTLAILRQPMMDELEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLTHYLNTL*
Ga0177922_102122804	F022886	GGA	MITIKNWDKLTRLFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVRV*
Ga0177922_102122807	F006547	N/A	VDKRKKWKIKMKWLLILLLPLSISAQTYDTSYQMIYYQKSLIKKGKIELYGYTSYDLLWADESGIGLLYTLPNKRKKKTKRK*
Ga0177922_102122808	F047676	N/A	MELIITLIVLIIIWCVAFMVGNKQGTNRIINQIKKDGGYYDMEYTSSAYPILDPTSSVNNDTMGTKIEPCIGHELESQKEIEKRDIDFMHKWIREKSGK*