Scaffold Ga0177922_10176259

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0177922_10176259

Scaffold Ga0177922_10176259

Overview

Basic Information
Taxon OID	3300013372 Open in IMG/M
Scaffold ID	Ga0177922_10176259 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1527
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.844722	Long. (^o)	-79.573889	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F054861	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_101762591	F054861	N/A	ERFNCRMNIKLLKHTRELFKSYDVPEHVRRDYRRKWVKSIRNLGDKWLFAKPIQRSVTRKENTQ*
Ga0177922_101762592	F026266	AGGA	MTIETITFHFVGQLEDSGAIVDVQCQIDEDGDCRSLDSAMYQGINVLEVISHDQWENLQWEASKKYKLERDTQAGIDFENSL*

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