Scaffold Ga0177922_10041977

Overview

Basic Information

• Taxon OID: 3300013372
• Scaffold ID: Ga0177922_10041977
• Source Dataset Name: Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1482
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.844722
  • Long. (^o): -79.573889
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019635	Metagenome / Metatranscriptome	228	Y
F022865	Metagenome / Metatranscriptome	212	Y
F031455	Metagenome / Metatranscriptome	182	Y
F081253	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_100419771	F022865	N/A	VMGRPRKHSRDAITCVVKLPPEVVAWIDQRYTTRQEGLAAIVANAAGVQ*
Ga0177922_100419772	F019635	GGCGG	MPTIKIYIDGDLEQPTATPEPDLQAEIDRINRTLSDVMRRIAKIESDVRGVRMRLIEDDAEGQVL*
Ga0177922_100419773	F081253	GGAGG	MSLIQTPEELADAIRNDPQRVAECLHRINRFGGQAVSCSVLQHSLAVYDSVASHCSTVRLWALLHDCHETLTGDVVRPYANGFLVNQQTSIDRQLRDILGITLIRDDAIAVKRADVWRGACEFQEVHAGRPVYHHEMPVSDWVDSVRALLSEVAK*
Ga0177922_100419774	F031455	AGGTGG	MRLHPVIEHHNLHRLAVGSSVLLKIPREQFTPLRRVIAFFNECTDDGTALRTKIQPNGITVSRREIVRIADSPDWKVGKSKPFVCADLLSLEHAVARANEAAKQLGRGYRFRVAVEGGKSFVLKTLCRCRCVIHRQEQYLRIVSMIRRMGVDCVGRVDGVELKDVRRVQRNFKHSLRFRAKQLDSNTFQIRRTR*