Scaffold Ga0121694_110032

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0121694_110032

Scaffold Ga0121694_110032

Overview

Basic Information
Taxon OID	3300013362 Open in IMG/M
Scaffold ID	Ga0121694_110032 Open in IMG/M
Source Dataset Name	Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P01505
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Weill Cornell Medical College
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	569
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Niallia → Niallia circulans	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → City → Subway → Unclassified → City Subway Metal/Plastic → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Source Dataset Sampling Location
Location Name	USA:New York City
Coordinates	Lat. (^o)	40.75	Long. (^o)	-73.99	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087385	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0121694_1100321	F087385	AGG	VPGDVLLSQGENPQLPSALRSLTSVFGMGTGVTFSL

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