Scaffold Ga0173629_10006530

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0173629_10006530

Scaffold Ga0173629_10006530

Overview

Basic Information
Taxon OID	3300013313 Open in IMG/M
Scaffold ID	Ga0173629_10006530 Open in IMG/M
Source Dataset Name	Marine surface microbial communities from Baltic Sea. Combined Assembly of 24 SPs re-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Berlin Center for Genomics in Biodiversity Research (BeGenDiv)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1674
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Surface Microbial Communities From Baltic Sea - Bioacid_Cyano

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	57.32	Long. (^o)	20.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049593	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0173629_100065304	F049593	AGGA	MDKELQDYYETLLDLFASAGWKQYIEDISDNMDLLQDITTIPDEKQFWFRRGQIEALQRVLSYESAIKNSYEDFEREVNA*

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