Scaffold Ga0173629_10001532

Overview

Basic Information

• Taxon OID: 3300013313
• Scaffold ID: Ga0173629_10001532
• Source Dataset Name: Marine surface microbial communities from Baltic Sea. Combined Assembly of 24 SPs re-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Berlin Center for Genomics in Biodiversity Research (BeGenDiv)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3813
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Surface Microbial Communities From Baltic Sea - Bioacid_Cyano

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 57.32
  • Long. (^o): 20.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012352	Metagenome / Metatranscriptome	281	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0173629_100015321	F012352	AGGGGG	MISYDLLKLAKDFGETLTLRKKTTSGSYNPATGSVDGAATTDYSFVGYFYNYDNGIAGNLDEIRRGTRKCVIPALGLAVEPDDEDQIIGNGDTVNIVSVVTIFSN