NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157372_11460767

Scaffold Ga0157372_11460767


Overview

Basic Information
Taxon OID3300013307 Open in IMG/M
Scaffold IDGa0157372_11460767 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009131Metagenome / Metatranscriptome322Y
F099086Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0157372_114607671F099086N/AVSCPSSDPTEVSPDARPRGDDEIKKMAEAILDEVVDRLLNEAAEVVLRED*
Ga0157372_114607672F009131N/ACVKKLKASFAKVGAFSSEENFSRGNPEGVIEWIDHEADAFEEILSSRGDICAFSGARGIATILEKKGCEHVKILAQSEAALSFEDAKDPSAEASIIGGKFFTDIWDNGGREMAGEIIRRSEKGIHDAREVAEAAEKSAEAEGQLGIK*

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