Scaffold Ga0157372_10026307

Overview

Basic Information

• Taxon OID: 3300013307
• Scaffold ID: Ga0157372_10026307
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6331
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia → Candidatus Jettenia caeni (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003720	Metagenome / Metatranscriptome	472	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157372_100263075	F003720	AGGA	MKTKMKRNSVAAIFCALVMLVAAPLAQATTVSEVQSMITQLKGKVQIIQISGKFAETKDRPGLLGQLDGVALTLDQGKFCNSVTKVRDFQKKVTDMISANKLNQDPTLGPTGQELLADGDAIIAALSDLNVQSTGAPCN*