Scaffold Ga0163162_10827364

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163162_10827364

Scaffold Ga0163162_10827364

Overview

Basic Information
Taxon OID	3300013306 Open in IMG/M
Scaffold ID	Ga0163162_10827364 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1042
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008583	Metagenome / Metatranscriptome	331	N
F019887	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163162_108273642	F008583	GGGGG	MSKRKQVFFEEDGVEAMARLQKQDEEFCRRLRIAIETGQEFCPASVFTEPCTSRPVLNYVRPG*
Ga0163162_108273643	F019887	AGGGGG	MPTDAERSNLLLQALATGIEDIRKAFEVAFGVVLPSAATLNEELERIARAIYAAADRPRPAPVIDDKPTTRTHFVYRIDIWTNDGKNILEHLAGVENLIVARAAYRIACERWPNARITLRQGARVVADSRR*

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