NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157378_11077591

Scaffold Ga0157378_11077591


Overview

Basic Information
Taxon OID3300013297 Open in IMG/M
Scaffold IDGa0157378_11077591 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)840
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014389Metagenome263Y
F016367Metagenome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0157378_110775911F016367N/ARDHSGFFFSSENERKLSSEVDALKADLDLLRAELETERQMHQKEEKTLRARVVETEKQRDAVVESTKNECKGVAGSACFFLYFDFFFR*
Ga0157378_110775912F014389GAGMKALVRSSHNKAEEVITHAEEELALAKLIRRGADRDLVQAQKTIEGLSGKLATATKNWKVVWKSFRSVADALRTPADDGQSWAQLIPRIPTRFQEFVKRYAQLCTKNVLAQVRVLAPEAPLSKIAEEADSQEYIDAVEQMEPEVEDLASRVVDNLNVVISSPDDDA*

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