Scaffold Ga0157378_10261815

Overview

Basic Information

• Taxon OID: 3300013297
• Scaffold ID: Ga0157378_10261815
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1660
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F002523	Metagenome / Metatranscriptome	552	Y
F016609	Metagenome / Metatranscriptome	246	Y
F027041	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157378_102618151	F001356	AGG	MTKSKASPPTDLKYRQVRVDALNKGRRGKHHELVVGILQELESLSPSSAMEIPLADVGGIGLANLRSAVHRAATSRGIQIETLADEKNFYIWRKVKAE*
Ga0157378_102618152	F016609	AGGAGG	MTEYKWHEVYKAALLETDWSKMEERINAAEDALYARKHEFDLNHGGTPEENLAIEGALSGLSALRHDAARWREKRAS*
Ga0157378_102618153	F027041	AGGAG	MFRLPRNYYQIYRVDHKRNREQMVDEVEGLHEAEKLIEKYLRNMTASEVRDEISYYRSTLSSRVPKFGLSRAS*
Ga0157378_102618154	F002523	AGG	MLVIVSVRRLDNDRIEVGVARPQHDANPTHNYRSEKEVRVVLSDFGISEETIASHLKLLAQMGTGEQLKFSPMDIPQNELLSKGFSAVKSKGAVPFG*