Scaffold Ga0157374_10066558

Overview

Basic Information

• Taxon OID: 3300013296
• Scaffold ID: Ga0157374_10066558
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3386
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012128	Metagenome / Metatranscriptome	283	Y
F020185	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157374_100665584	F020185	N/A	MSRKKLFVLVGAGFLLIGVGCGIAVQRDLSAIPAGRVGFDDMCGLQEYFDALEIKTVQPPRLVSALDLEGPSAGKVVHGGQERFAFENDFLLKNLRRVLNENWRRLPEPIAGAAEIEIDVRWSEKAGAKRVVTDRPSELIIGGQSWDLPYHPCLSELLYGAPLYRQRRQMWGLPLPGQHPDAAVEPELPPISTGPLVGGGDAGAAAVDAARAH*
Ga0157374_100665585	F012128	GGA	MDRLRELRGPDTRERDLANILGFEHSRAVRWKEGQMYVDRAEYLVRLADALDVETMLLVAMASGTLTVEQAHRQIAGSARPDDGKKKKATTRVEPVEVATDASLFALDGSKFEASGRGVVLLIAGNGEGRLEFGEALARHADVNGMVATGLSIGICLAERYRPELVFLDLGVANVQAFEACRVLSSLTSRAQRRCRVVAGTSTVTDTVEKPALMAGAANVTLFPFASGLFESELDRLEERLGPRKAARR*