Scaffold Ga0157374_10040104

Overview

Basic Information

• Taxon OID: 3300013296
• Scaffold ID: Ga0157374_10040104
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4311
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007778	Metagenome / Metatranscriptome	345	Y
F022989	Metagenome / Metatranscriptome	212	Y
F043956	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157374_100401042	F007778	GGAGG	MDIKTKYGWQELYAAAILETDWSKIEQKIQVAENGIRARLHEFSLNHGGPPEENQAIEDALHGLNILRNEVTAWRGSKLAG*
Ga0157374_100401044	F043956	AGAAG	VPPPITERVKKLRQEIAELTEKNRRYSVGPKYGSAVADNERRFQRLFEIAEELKSLTDWKKP*
Ga0157374_100401045	F022989	N/A	MPLSNYEDRIRLLTNQAIACKSQHEVDAILQELNAAIKEHIRYFRANAVEMIPEAFGTGSNAAD*